We analyze a system of fermionic 6Li atoms in an optical trap, and show that an atom ‘on demand’? can be prepared with ultra-high fidelity, exceeding 0.99998. This process can be scaled to many sites in parallel, providing a realistic method to initialize N qubits at ultra-high fidelity for quantum computing. We also show how efficient quantum gate operation can be implemented in this system, and how spatially resolved single-atom detection can be performed.